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Lenticas9 Blast Vector, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Figure 2. TDI-11055 suppresses the cellular growth of MLL-r and NPM1-mutated leukemia cells through on-target inhibition of ENL. A and B, Dose– response viability curves (8 days) for TDI-11055 in human leukemia cell lines with high (A) and low (B) dependence on ENL defined by genetic studies. n = 3. NPM1 mut, NPM1-mutated. C–F, Representative images (left) and quantification (right) of colonies formed by indicated human leukemia cell lines treated with DMSO or TDI-11055 (TDI; 1 and 10 μmol/L). Error bars represent mean ± SEM (n = 3). One of two independent experiment batches is shown. G, Schematic of <t>CRISPR-Cas9</t> mutagenesis scanning workflow. MOI, multiplicity of infection; sgRNA, single-guide RNA; T_final, end time point; T_initial, start time point. H, Violin plots showing the log2 (fold-change) sgRNA enrichment (T_final over T_initial) in MV4;11 cells. Neg, negative controls, sgRNAs targeting known nonessential genes; Pos, positive controls, sgRNAs targeting known essential genes. Black lines denote median. See Supplementary Table S2. I, Scatter plot showing log2 (fold-change sgRNA enrichment) in MV4;11 in TDI-11055 vs. DMSO comparison. sgRNAs are positioned along the x axis by the ENL coding sequence. Data represent average across three replicate transductions. Regions 1 and 2 (R1 and R2) highlighted in blue contain 4 or more enriched sgRNAs. See Supplementary Table S3. sgENL326 shows the strongest enrichment in TDI-11055 treatment condition over DMSO among all sgRNAs. (continued on next page)
Constitutive Cas9 Vectors, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Figure 2. TDI-11055 suppresses the cellular growth of MLL-r and NPM1-mutated leukemia cells through on-target inhibition of ENL. A and B, Dose– response viability curves (8 days) for TDI-11055 in human leukemia cell lines with high (A) and low (B) dependence on ENL defined by genetic studies. n = 3. NPM1 mut, NPM1-mutated. C–F, Representative images (left) and quantification (right) of colonies formed by indicated human leukemia cell lines treated with DMSO or TDI-11055 (TDI; 1 and 10 μmol/L). Error bars represent mean ± SEM (n = 3). One of two independent experiment batches is shown. G, Schematic of <t>CRISPR-Cas9</t> mutagenesis scanning workflow. MOI, multiplicity of infection; sgRNA, single-guide RNA; T_final, end time point; T_initial, start time point. H, Violin plots showing the log2 (fold-change) sgRNA enrichment (T_final over T_initial) in MV4;11 cells. Neg, negative controls, sgRNAs targeting known nonessential genes; Pos, positive controls, sgRNAs targeting known essential genes. Black lines denote median. See Supplementary Table S2. I, Scatter plot showing log2 (fold-change sgRNA enrichment) in MV4;11 in TDI-11055 vs. DMSO comparison. sgRNAs are positioned along the x axis by the ENL coding sequence. Data represent average across three replicate transductions. Regions 1 and 2 (R1 and R2) highlighted in blue contain 4 or more enriched sgRNAs. See Supplementary Table S3. sgENL326 shows the strongest enrichment in TDI-11055 treatment condition over DMSO among all sgRNAs. (continued on next page)
Wt Cas9 Expression Plasmid Lenticas9 Puro, supplied by Addgene inc, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Figure 2. TDI-11055 suppresses the cellular growth of MLL-r and NPM1-mutated leukemia cells through on-target inhibition of ENL. A and B, Dose– response viability curves (8 days) for TDI-11055 in human leukemia cell lines with high (A) and low (B) dependence on ENL defined by genetic studies. n = 3. NPM1 mut, NPM1-mutated. C–F, Representative images (left) and quantification (right) of colonies formed by indicated human leukemia cell lines treated with DMSO or TDI-11055 (TDI; 1 and 10 μmol/L). Error bars represent mean ± SEM (n = 3). One of two independent experiment batches is shown. G, Schematic of <t>CRISPR-Cas9</t> mutagenesis scanning workflow. MOI, multiplicity of infection; sgRNA, single-guide RNA; T_final, end time point; T_initial, start time point. H, Violin plots showing the log2 (fold-change) sgRNA enrichment (T_final over T_initial) in MV4;11 cells. Neg, negative controls, sgRNAs targeting known nonessential genes; Pos, positive controls, sgRNAs targeting known essential genes. Black lines denote median. See Supplementary Table S2. I, Scatter plot showing log2 (fold-change sgRNA enrichment) in MV4;11 in TDI-11055 vs. DMSO comparison. sgRNAs are positioned along the x axis by the ENL coding sequence. Data represent average across three replicate transductions. Regions 1 and 2 (R1 and R2) highlighted in blue contain 4 or more enriched sgRNAs. See Supplementary Table S3. sgENL326 shows the strongest enrichment in TDI-11055 treatment condition over DMSO among all sgRNAs. (continued on next page)
Lenticas9 Blast, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Addgene inc lentiviral vectors
Figure 2. TDI-11055 suppresses the cellular growth of MLL-r and NPM1-mutated leukemia cells through on-target inhibition of ENL. A and B, Dose– response viability curves (8 days) for TDI-11055 in human leukemia cell lines with high (A) and low (B) dependence on ENL defined by genetic studies. n = 3. NPM1 mut, NPM1-mutated. C–F, Representative images (left) and quantification (right) of colonies formed by indicated human leukemia cell lines treated with DMSO or TDI-11055 (TDI; 1 and 10 μmol/L). Error bars represent mean ± SEM (n = 3). One of two independent experiment batches is shown. G, Schematic of <t>CRISPR-Cas9</t> mutagenesis scanning workflow. MOI, multiplicity of infection; sgRNA, single-guide RNA; T_final, end time point; T_initial, start time point. H, Violin plots showing the log2 (fold-change) sgRNA enrichment (T_final over T_initial) in MV4;11 cells. Neg, negative controls, sgRNAs targeting known nonessential genes; Pos, positive controls, sgRNAs targeting known essential genes. Black lines denote median. See Supplementary Table S2. I, Scatter plot showing log2 (fold-change sgRNA enrichment) in MV4;11 in TDI-11055 vs. DMSO comparison. sgRNAs are positioned along the x axis by the ENL coding sequence. Data represent average across three replicate transductions. Regions 1 and 2 (R1 and R2) highlighted in blue contain 4 or more enriched sgRNAs. See Supplementary Table S3. sgENL326 shows the strongest enrichment in TDI-11055 treatment condition over DMSO among all sgRNAs. (continued on next page)
Lentiviral Vectors, supplied by Addgene inc, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Figure 2. TDI-11055 suppresses the cellular growth of MLL-r and NPM1-mutated leukemia cells through on-target inhibition of ENL. A and B, Dose– response viability curves (8 days) for TDI-11055 in human leukemia cell lines with high (A) and low (B) dependence on ENL defined by genetic studies. n = 3. NPM1 mut, NPM1-mutated. C–F, Representative images (left) and quantification (right) of colonies formed by indicated human leukemia cell lines treated with DMSO or TDI-11055 (TDI; 1 and 10 μmol/L). Error bars represent mean ± SEM (n = 3). One of two independent experiment batches is shown. G, Schematic of CRISPR-Cas9 mutagenesis scanning workflow. MOI, multiplicity of infection; sgRNA, single-guide RNA; T_final, end time point; T_initial, start time point. H, Violin plots showing the log2 (fold-change) sgRNA enrichment (T_final over T_initial) in MV4;11 cells. Neg, negative controls, sgRNAs targeting known nonessential genes; Pos, positive controls, sgRNAs targeting known essential genes. Black lines denote median. See Supplementary Table S2. I, Scatter plot showing log2 (fold-change sgRNA enrichment) in MV4;11 in TDI-11055 vs. DMSO comparison. sgRNAs are positioned along the x axis by the ENL coding sequence. Data represent average across three replicate transductions. Regions 1 and 2 (R1 and R2) highlighted in blue contain 4 or more enriched sgRNAs. See Supplementary Table S3. sgENL326 shows the strongest enrichment in TDI-11055 treatment condition over DMSO among all sgRNAs. (continued on next page)

Journal: Cancer Discovery

Article Title: Small-Molecule Inhibition of the Acyl-Lysine Reader ENL as a Strategy against Acute Myeloid Leukemia

doi: 10.1158/2159-8290.cd-21-1307

Figure Lengend Snippet: Figure 2. TDI-11055 suppresses the cellular growth of MLL-r and NPM1-mutated leukemia cells through on-target inhibition of ENL. A and B, Dose– response viability curves (8 days) for TDI-11055 in human leukemia cell lines with high (A) and low (B) dependence on ENL defined by genetic studies. n = 3. NPM1 mut, NPM1-mutated. C–F, Representative images (left) and quantification (right) of colonies formed by indicated human leukemia cell lines treated with DMSO or TDI-11055 (TDI; 1 and 10 μmol/L). Error bars represent mean ± SEM (n = 3). One of two independent experiment batches is shown. G, Schematic of CRISPR-Cas9 mutagenesis scanning workflow. MOI, multiplicity of infection; sgRNA, single-guide RNA; T_final, end time point; T_initial, start time point. H, Violin plots showing the log2 (fold-change) sgRNA enrichment (T_final over T_initial) in MV4;11 cells. Neg, negative controls, sgRNAs targeting known nonessential genes; Pos, positive controls, sgRNAs targeting known essential genes. Black lines denote median. See Supplementary Table S2. I, Scatter plot showing log2 (fold-change sgRNA enrichment) in MV4;11 in TDI-11055 vs. DMSO comparison. sgRNAs are positioned along the x axis by the ENL coding sequence. Data represent average across three replicate transductions. Regions 1 and 2 (R1 and R2) highlighted in blue contain 4 or more enriched sgRNAs. See Supplementary Table S3. sgENL326 shows the strongest enrichment in TDI-11055 treatment condition over DMSO among all sgRNAs. (continued on next page)

Article Snippet: Constitutive Cas9 vectors (LentiV_Cas9_Puro vector, ref. 80; LentiCas9_Blast vector, Addgene 52962, ref. 81; a gift from Feng Zhang, Massachusetts Institute of Technology, Cambridge, MA) were used to generate Cas9expressing cells. sgRNAs were cloned into the LRG2.1T (82).

Techniques: Inhibition, CRISPR, Mutagenesis, Infection, Comparison, Sequencing